Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFA23118.1 | def-2 | BIFGAL_03230 | BIFGAL_03229 | AMP-binding enzyme; KEGG: blo:BL1501 3.3e-220 fadD3; possible long-chain-fatty acid CoA ligase K01897; Psort location: CytoplasmicMembrane, score: 9.82. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.706 |
| EFA23118.1 | rplR | BIFGAL_03230 | BIFGAL_03806 | AMP-binding enzyme; KEGG: blo:BL1501 3.3e-220 fadD3; possible long-chain-fatty acid CoA ligase K01897; Psort location: CytoplasmicMembrane, score: 9.82. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.593 |
| def-2 | EFA23118.1 | BIFGAL_03229 | BIFGAL_03230 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | AMP-binding enzyme; KEGG: blo:BL1501 3.3e-220 fadD3; possible long-chain-fatty acid CoA ligase K01897; Psort location: CytoplasmicMembrane, score: 9.82. | 0.706 |
| def-2 | fmt | BIFGAL_03229 | BIFGAL_03420 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.708 |
| def-2 | rplR | BIFGAL_03229 | BIFGAL_03806 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.734 |
| def-2 | rplU | BIFGAL_03229 | BIFGAL_04450 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.717 |
| def-2 | rpmA | BIFGAL_03229 | BIFGAL_04449 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.737 |
| def-2 | rpsB | BIFGAL_03229 | BIFGAL_03228 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S2; KEGG: bam:Bamb_1010 0.0043 ribonuclease III K01162; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family. | 0.734 |
| def-2 | rpsD | BIFGAL_03229 | BIFGAL_02658 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.736 |
| def-2 | rpsP | BIFGAL_03229 | BIFGAL_03480 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.705 |
| def-2 | rpsT | BIFGAL_03229 | BIFGAL_02707 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.715 |
| def-2 | tig | BIFGAL_03229 | BIFGAL_02536 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.719 |
| fmt | def-2 | BIFGAL_03420 | BIFGAL_03229 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.708 |
| rplR | EFA23118.1 | BIFGAL_03806 | BIFGAL_03230 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | AMP-binding enzyme; KEGG: blo:BL1501 3.3e-220 fadD3; possible long-chain-fatty acid CoA ligase K01897; Psort location: CytoplasmicMembrane, score: 9.82. | 0.593 |
| rplR | def-2 | BIFGAL_03806 | BIFGAL_03229 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.734 |
| rplR | rplU | BIFGAL_03806 | BIFGAL_04450 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplR | rpmA | BIFGAL_03806 | BIFGAL_04449 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
| rplR | rpsB | BIFGAL_03806 | BIFGAL_03228 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S2; KEGG: bam:Bamb_1010 0.0043 ribonuclease III K01162; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| rplR | rpsD | BIFGAL_03806 | BIFGAL_02658 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| rplR | rpsP | BIFGAL_03806 | BIFGAL_03480 | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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