STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA23124.1Isocitrate dehydrogenase, NADP-dependent; KEGG: blo:BL1499 1.6e-197 icd1; isocitrate dehydrogenase [NADP] K00031; Psort location: Cytoplasmic, score: 8.87; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (416 aa)    
Predicted Functional Partners:
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 0.985
EFA23607.1
Class II glutamine amidotransferase; KEGG: blo:BL0834 0. gltB; glutamate synthase [NADPH] large subunit; NADPH-gogat K00265; Psort location: Cytoplasmic, score: 8.87.
    
 0.968
gltA
KEGG: blo:BL1733 2.4e-176 gltA2; citrate synthase K01647; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.954
EFA22408.1
Glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; KEGG: blo:BL0630 7.1e-202 gdhA; NADP-specific glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.98; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.919
EFA23487.1
Lyase; KEGG: blo:BL0338 2.6e-156 ansB; aspartate ammonia-lyase K01744; Psort location: Cytoplasmic, score: 9.98.
     
 0.898
argH
Argininosuccinate lyase; KEGG: blo:BL1057 1.9e-208 argH; argininosuccinate lyase; arginosuccinase K01755; Psort location: Cytoplasmic, score: 8.87.
     
 0.896
EFA23292.1
Lyase; KEGG: blo:BL1800 2.2e-214 purB; adenylosuccinate lyase K01756; Psort location: Cytoplasmic, score: 8.87.
    
  0.894
EFA23047.1
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpr:CPR_2296 1.3e-106 aldehyde dehydrogenase K00129; Psort location: Cytoplasmic, score: 9.98.
   
 
 0.891
EFA23371.1
Aminotransferase, class I/II; KEGG: blo:BL0783 8.1e-146 probable aminotransferase K00811; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.889
EFA22048.1
Aminotransferase, class I/II; KEGG: blo:BL1286 5.2e-167 aspC; aspartate aminotransferase K00812; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.889
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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