STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA23147.1ComEC/Rec2-like protein; Psort location: CytoplasmicMembrane, score: 9.99. (621 aa)    
Predicted Functional Partners:
EFA23148.1
comEA protein; KEGG: bur:Bcep18194_A5099 1.8e-05 RNA binding S1; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.881
EFA23146.1
KEGG: blo:BL1454 2.9e-86 putative DNA polymerase III, delta subunit K02340.
 
   
 0.873
EFA23145.1
Hydrolase, P-loop family; KEGG: cjk:jk1734 3.7e-19 alr; hypothetical protein K01775; Psort location: Cytoplasmic, score: 8.87.
       0.851
rimI
KEGG: blo:BL1456 2.0e-53 rimI; probable ribosomal-protein-alanine N-acetyltransferase K03789.
       0.699
yeaZ
Universal bacterial protein YeaZ; KEGG: ret:RHE_CH00380 9.0e-08 probable O-sialoglycoprotein endopeptidase protein K01409; Psort location: Cytoplasmic, score: 8.87.
       0.699
leuS
leucine--tRNA ligase; KEGG: blo:BL1450 0. leuS; leucyl-tRNA synthetase K01869; Psort location: Cytoplasmic, score: 9.65; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.680
EFA23450.1
Mg chelatase-like protein; KEGG: fal:FRAAL5784 9.2e-106 magnesium-chelatase (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D K07391; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.642
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
    0.592
EFA23150.1
Hypothetical protein; KEGG: bur:Bcep18194_A4762 7.4e-09 ABC amino acid transporter, periplasmic ligand binding protein K01713; Belongs to the bacterial solute-binding protein 3 family.
  
    0.578
EFA23449.1
Putative DNA protecting protein DprA; Psort location: CytoplasmicMembrane, score: 9.97.
 
  
 0.569
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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