STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA23219.1Tetratricopeptide repeat protein; Psort location: Cytoplasmic, score: 8.87. (1153 aa)    
Predicted Functional Partners:
EFA23220.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.858
EFA22968.1
Hypothetical protein; KEGG: mtu:Rv3202c 1.7e-27 possible ATP-dependent DNA helicase K01529; Psort location: Cytoplasmic, score: 8.87.
 
 
  0.837
EFA23390.1
Ser/Thr phosphatase family protein; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.837
EFA22721.1
Ser/Thr phosphatase family protein; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.828
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.816
EFA22969.1
UvrD/REP helicase; KEGG: tfu:Tfu_0524 6.9e-64 putative DNA helicase K01529; Belongs to the helicase family. UvrD subfamily.
 
 
  0.809
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.785
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.780
EFA23126.1
Hypothetical protein.
  
     0.774
EFA22875.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.774
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.