STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA22227.1Transcriptional regulatory protein, C-terminal domain protein; KEGG: fal:FRAAL1628 1.8e-20 response regulator in two-component regulatory system; Psort location: Cytoplasmic, score: 9.98. (232 aa)    
Predicted Functional Partners:
EFA22702.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: mle:ML2440 1.7e-47 probable two-component system sensor histidine kinase K07768; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.929
EFA22148.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: plu:plu2777 3.7e-38 baeS; two-component sensor kinase K07642; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.917
EFA23271.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: fra:Francci3_0235 1.8e-52 periplasmic sensor signal transduction histidine kinase K07636; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.881
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
    0.852
EFA22229.1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 5.7e-20 acetate kinase K00925.
       0.675
dapE
KEGG: blo:BL1280 5.3e-158 dapE; succinyl-diaminopimelate desuccinylase K01439; Psort location: Cytoplasmic, score: 8.87.
  
     0.514
EFA22226.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.464
EFA23892.1
Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 3.5e-19 crp; CRP-cAMP transcriptional dual regulator K00924; Psort location: Cytoplasmic, score: 9.98.
   
 0.462
EFA22877.1
Hypothetical protein.
  
    0.458
EFA23420.1
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
   
 
 0.449
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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