STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA22154.1KEGG: bur:Bcep18194_A5932 1.5e-41 ABC heavy metal transporter, ATPase subunit K06022; Psort location: CytoplasmicMembrane, score: 9.49. (338 aa)    
Predicted Functional Partners:
EFA22153.1
ABC 3 transport family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
EFA22155.1
ABC transporter, substrate-binding protein; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.987
EFA22833.1
ABC transporter, substrate-binding protein.
 
 
 0.968
EFA23466.1
YodA.
  
 
 0.828
EFA23221.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A3688 9.9e-22 ABC transporter component K06020; Psort location: Cytoplasmic, score: 8.87.
  
     0.657
folD
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.599
EFA22915.1
KEGG: reh:H16_A1501 5.4e-16 ABC-type transporter, ATPase component: LPT family; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
  0.587
EFA22557.1
Transcriptional regulator, Fur family; Psort location: Cytoplasmic, score: 9.98; Belongs to the Fur family.
  
  
 0.561
rpsA
30S ribosomal protein S1; KEGG: cno:NT01CX_2096 1.1e-63 RpsA K03527; Psort location: Cytoplasmic, score: 9.98.
       0.528
EFA22156.1
Hypothetical protein.
       0.473
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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