STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA22098.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the D-glutamate cyclase family. (261 aa)    
Predicted Functional Partners:
EFA22100.1
Conserved hypothetical protein TIGR00370; KEGG: reu:Reut_A2450 1.5e-103 allophanate hydrolase subunit 2:conserved hypothetical protein K01457; Psort location: Cytoplasmic, score: 8.87.
  
    0.994
EFA22102.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     0.987
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.892
EFA22101.1
Carbamoyl-phosphate synthase L chain, ATP binding domain protein; KEGG: atu:Atu3913 1.3e-154 biotin carboxylase K01946; Psort location: Cytoplasmic, score: 8.87.
       0.667
dat
Aminotransferase, class IV; KEGG: lxx:Lxx17640 6.2e-36 pabC; branched-chain amino acid aminotransferase K02619; Psort location: Cytoplasmic, score: 8.87.
       0.570
EFA22096.1
Chorismate mutase; KEGG: blo:BL0397 1.1e-40 narrowly conserved hypothetical protein with mutase domain K04092; Psort location: Cytoplasmic, score: 8.87.
       0.412
EFA23389.1
Transcriptional regulator, IclR family, C-terminal domain protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.405
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.