Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BchM | PufM | SAMN05216376_104368 | SAMN05216376_1195 | Mg-protoporphyrin IX methyltransferase. | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | 0.951 |
| BchM | PuhA | SAMN05216376_104368 | SAMN05216376_104370 | Mg-protoporphyrin IX methyltransferase. | Photosynthetic reaction center H subunit. | 0.990 |
| BchM | SDC87036.1 | SAMN05216376_104368 | SAMN05216376_104369 | Mg-protoporphyrin IX methyltransferase. | MFS transporter, BCD family, chlorophyll transporter. | 0.978 |
| BchM | SDC87096.1 | SAMN05216376_104368 | SAMN05216376_104371 | Mg-protoporphyrin IX methyltransferase. | PH domain-containing protein. | 0.982 |
| BchM | SDC87139.1 | SAMN05216376_104368 | SAMN05216376_104372 | Mg-protoporphyrin IX methyltransferase. | Putative photosynthetic complex assembly protein. | 0.972 |
| BchM | SDC87171.1 | SAMN05216376_104368 | SAMN05216376_104373 | Mg-protoporphyrin IX methyltransferase. | Hypothetical protein. | 0.902 |
| BchM | SDC87232.1 | SAMN05216376_104368 | SAMN05216376_104375 | Mg-protoporphyrin IX methyltransferase. | Putative photosynthetic complex assembly protein 2. | 0.942 |
| BchM | acsF | SAMN05216376_104368 | SAMN05216376_104374 | Mg-protoporphyrin IX methyltransferase. | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.995 |
| BchM | bchL | SAMN05216376_104368 | SAMN05216376_104367 | Mg-protoporphyrin IX methyltransferase. | Ferredoxin protochlorophyllide reductase subunit L; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.995 |
| BchM | bchN | SAMN05216376_104368 | SAMN05216376_104364 | Mg-protoporphyrin IX methyltransferase. | Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.973 |
| PufM | BchM | SAMN05216376_1195 | SAMN05216376_104368 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Mg-protoporphyrin IX methyltransferase. | 0.951 |
| PufM | PuhA | SAMN05216376_1195 | SAMN05216376_104370 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Photosynthetic reaction center H subunit. | 0.998 |
| PufM | SDC87036.1 | SAMN05216376_1195 | SAMN05216376_104369 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | MFS transporter, BCD family, chlorophyll transporter. | 0.872 |
| PufM | SDC87096.1 | SAMN05216376_1195 | SAMN05216376_104371 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | PH domain-containing protein. | 0.942 |
| PufM | SDC87139.1 | SAMN05216376_1195 | SAMN05216376_104372 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Putative photosynthetic complex assembly protein. | 0.878 |
| PufM | SDC87171.1 | SAMN05216376_1195 | SAMN05216376_104373 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Hypothetical protein. | 0.785 |
| PufM | SDC87232.1 | SAMN05216376_1195 | SAMN05216376_104375 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Putative photosynthetic complex assembly protein 2. | 0.868 |
| PufM | acsF | SAMN05216376_1195 | SAMN05216376_104374 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.864 |
| PufM | bchL | SAMN05216376_1195 | SAMN05216376_104367 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Ferredoxin protochlorophyllide reductase subunit L; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.947 |
| PufM | bchN | SAMN05216376_1195 | SAMN05216376_104364 | Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.903 |
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