STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT05308.1TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; PAAR repeat-containing protein; KEGG: eca:ECA4278 rhs-family protein. (1475 aa)    
Predicted Functional Partners:
ACT05307.1
PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein.
  
 
 0.983
ACT06028.1
PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein.
  
 
 0.935
ACT06361.1
PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein.
  
 
 0.935
ACT05306.1
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA2867 putative rhs accessory genetic element.
 
  
 0.851
ACT05309.1
KEGG: esa:ESA_03890 hypothetical protein.
       0.773
ACT07628.1
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: eca:ECA3442 hypothetical protein.
 
  
 0.660
ACT07631.1
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: eca:ECA3445 hypothetical protein.
 
  
 0.632
ACT07624.1
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: eca:ECA3438 hypothetical protein.
 
  
 0.616
ACT07630.1
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: eca:ECA3444 hypothetical protein.
 
  
 0.607
ACT07623.1
TIGRFAM: type IV / VI secretion system protein, DotU family; KEGG: eca:ECA3437 hypothetical protein.
 
  
 0.604
Your Current Organism:
Dickeya chrysanthemi
NCBI taxonomy Id: 561229
Other names: D. chrysanthemi Ech1591, Dickeya chrysanthemi Ech1591, Dickeya dadantii Ech1591, Dickeya zeae Ech1591
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.