STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT05308.1TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; PAAR repeat-containing protein; KEGG: eca:ECA4278 rhs-family protein (1475 aa)    
Predicted Functional Partners:
ACT05307.1
PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein
 
  
 0.966
ACT05306.1
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA2867 putative rhs accessory genetic element
  
 0.895
ACT05309.1
KEGG: esa:ESA_03890 hypothetical protein
       0.845
ACT06028.1
Uncharacterized protein; PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein
 
  
 0.815
ACT06361.1
Uncharacterized protein; PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein
 
  
 0.815
ACT07617.1
PFAM: ImpA domain protein; KEGG: eca:ECA3431 hypothetical protein
 
   
 0.765
ACT07626.1
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: eca:ECA3440 hypothetical protein
 
   
 0.760
ACT07620.1
TIGRFAM: type VI secretion-associated protein, VC_A0118 family; KEGG: eca:ECA3434 hypothetical protein
 
     0.754
ACT07616.1
PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: eca:ECA3430 putative lipoprotein
 
   
 0.735
ACT07666.1
PFAM: protein of unknown function DUF1017; KEGG: eca:ECA1447 hypothetical protein
  
     0.725
Your Current Organism:
Dickeya zeae
NCBI taxonomy Id: 561229
Other names: D. zeae Ech1591, Dickeya chrysanthemi Ech1591, Dickeya dadantii Ech1591, Dickeya zeae, Dickeya zeae Ech1591, Dickeya zeae str. Ech1591, Dickeya zeae strain Ech1591
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