STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT06381.1Lysozyme; PFAM: glycoside hydrolase family 24; KEGG: kpn:KPN_04875 putative prophage endolysin, control of lysis. (163 aa)    
Predicted Functional Partners:
ACT06382.1
PFAM: holin family 2; KEGG: eca:ECA2617 phage lysis protein Y, holin.
       0.800
ACT06380.1
KEGG: eca:ECA2615 putative phage encoded host lysis, regulatory protein.
       0.790
ACT06679.1
PFAM: P2 phage tail completion R family protein; KEGG: kpn:KPN_04873 putative prophage, tail completion protein.
 
     0.461
ACT06559.1
PFAM: porin LamB type; KEGG: efe:EFER_4018 carbohydrate-specific outer membrane porin, cryptic.
  
     0.458
ACT08144.1
KEGG: rso:RSc0209 hypothetical protein.
  
     0.458
ACT08819.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: kpe:KPK_2763 DNA-binding protein.
  
     0.453
ACT08827.1
Phage-related tail fibre protein-like protein; KEGG: eca:ECA2608 bacteriophage variable tail fiber protein H.
 
     0.431
ACT07166.1
PFAM: Citrate carrier protein; KEGG: eca:ECA2576 citrate/acetate antiporter.
  
     0.405
ACT06665.1
TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: see:SNSL254_A4384 phage major tail tube protein.
  
     0.402
Your Current Organism:
Dickeya chrysanthemi
NCBI taxonomy Id: 561229
Other names: D. chrysanthemi Ech1591, Dickeya chrysanthemi Ech1591, Dickeya dadantii Ech1591, Dickeya zeae Ech1591
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.