STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT06674.1PFAM: Tail Collar domain protein; KEGG: eta:ETA_05860 putative phage tail fiber protein. (401 aa)    
Predicted Functional Partners:
ACT06675.1
TIGRFAM: phage tail protein I; KEGG: yps:YPTB1748 putative bacteriophage protein.
 
  
 0.941
ACT06676.1
PFAM: Baseplate J family protein; KEGG: ecf:ECH74115_3037 baseplate assembly protein GpJ.
 
  
 0.939
ACT06678.1
TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: ecm:EcSMS35_4337 phage baseplate assembly protein GpV.
 
  
 0.936
ACT06677.1
PFAM: GPW/gp25 family protein; KEGG: kpn:KPN_04869 putative prophage baseplate protein.
 
    0.916
ACT06661.1
PFAM: P2 GpU family protein; KEGG: yps:YPTB1740 putative phage tail protein.
 
  
 0.895
ACT06680.1
PFAM: tail X family protein; KEGG: eta:ETA_05750 putative phage tail protein.
 
    0.889
ACT06665.1
TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: see:SNSL254_A4384 phage major tail tube protein.
 
  
 0.887
ACT06660.1
PFAM: late control D family protein; KEGG: ecg:E2348C_2892 predicted late gene regulator.
 
  
 0.864
ACT06666.1
PFAM: tail sheath protein; KEGG: spe:Spro_0863 tail sheath protein.
 
  
 0.860
ACT06679.1
PFAM: P2 phage tail completion R family protein; KEGG: kpn:KPN_04873 putative prophage, tail completion protein.
 
    0.750
Your Current Organism:
Dickeya chrysanthemi
NCBI taxonomy Id: 561229
Other names: D. chrysanthemi Ech1591, Dickeya chrysanthemi Ech1591, Dickeya dadantii Ech1591, Dickeya zeae Ech1591
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