STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT08796.1PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: eca:ECA0130 hypothetical protein. (287 aa)    
Predicted Functional Partners:
ACT08591.1
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: eca:ECA0312 glutamate synthase subunit alpha.
  
    0.673
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
  
 0.632
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
    0.591
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  
 0.511
ACT08795.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0131 LysR family transcriptional regulator.
       0.509
ACT08797.1
PFAM: integrase family protein; KEGG: sbo:SBO_3647 putative integrase; Belongs to the 'phage' integrase family.
       0.456
ACT06726.1
TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: eca:ECA2167 putative inositol monophosphatase.
 
 
    0.434
ACT06840.1
PFAM: peptidase M22 glycoprotease; KEGG: eca:ECA2374 hypothetical protein.
 
     0.402
Your Current Organism:
Dickeya chrysanthemi
NCBI taxonomy Id: 561229
Other names: D. chrysanthemi Ech1591, Dickeya chrysanthemi Ech1591, Dickeya dadantii Ech1591, Dickeya zeae Ech1591
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.