STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_0010PTS system, lactose/cellobiose family IIC subunit; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. (437 aa)    
Predicted Functional Partners:
PC1_0011
PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: eca:ECA4433 pts system, cellobiose-specific IIA component.
 
 
 0.994
PC1_0009
PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA4435 pts system, IIB component.
 
 
 0.990
PC1_3470
PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: eca:ECA3648 PTS system, cellobiose-specific IIA component.
 
 
 0.978
PC1_1822
PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: eca:ECA2489 PTS system, cellobiose-specific IIA component.
 
 
 0.977
PC1_2918
PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: eca:ECA3136 PTS system, cellobiose-specific IIA component.
 
 
 0.977
PC1_0028
PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA4409 PTS system, cellobiose-specific IIB component.
 
 
 0.968
PC1_3467
PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA3645 PTS system, lichenan-specific IIB component.
 
 
 0.967
PC1_0012
PFAM: glycoside hydrolase family 1; KEGG: eca:ECA4432 6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
  
 
 0.921
PC1_0775
Phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: cko:CKO_00377 phosphohistidinoprotein-hexose phosphotransferase component of PTS system (HPr).
    
  0.902
PC1_3468
PFAM: glycoside hydrolase family 1; KEGG: eca:ECA3646 putative 6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
 
 
 0.808
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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