STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_0124TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: son:SO_A0078 hypothetical protein. (80 aa)    
Predicted Functional Partners:
PC1_0123
PFAM: plasmid stabilization system; KEGG: son:SO_A0079 hypothetical protein; Belongs to the RelE toxin family.
 
 
 0.978
PC1_3457
PFAM: plasmid stabilization system; KEGG: efe:EFER_2170 conserved hypothetical protein, putative plasmid stabilisation system protein.
 
 
 0.866
PC1_0448
Transcriptional regulator, XRE family; KEGG: eca:ECA0463 nicotinamide-nucleotide adenylyltransferase; TIGRFAM: nicotinamide-nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
   
    0.850
PC1_0424
KEGG: xfa:XF2074 hypothetical protein.
  
 
 0.630
PC1_0408
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: rle:pRL110045 hypothetical protein.
  
 
 0.592
PC1_0125
PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA4322 glycerol-3-phosphate transporter periplasmic binding protein.
       0.496
cobB
PFAM: Silent information regulator protein Sir2; KEGG: eca:ECA1827 NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.448
PC1_1600
KEGG: yen:YE0979 DNA-binding protein.
  
     0.426
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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