STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_0230TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0246 putative amino-acid transport system permease protein. (221 aa)    
Predicted Functional Partners:
PC1_0231
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA0247 putative cystine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
  0.996
PC1_1698
KEGG: eca:ECA2671 arginine-binding periplasmic protein 2; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
   0.977
PC1_1701
KEGG: eca:ECA2668 arginine-binding periplasmic protein 1; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
   0.976
PC1_1584
KEGG: eca:ECA2768 glutamine ABC transporter periplasmic protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
   0.975
PC1_3355
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: eca:ECA3537 amino acid-binding protein.
   0.956
PC1_3357
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3539 amino acid ABC transporter, ATP-binding protein.
 
 0.834
PC1_3993
PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: eca:ECA4193 putative amino-acid ABC transporter ATP-binding protein.
 
 0.823
PC1_1582
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2770 glutamine ABC transporter ATP-binding protein.
 
 0.822
PC1_2698
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2970 ABC-transporter ATP-binding protein.
 
 0.822
PC1_3995
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA4195 putative amino-acid ABC transporter binding protein; Belongs to the bacterial solute-binding protein 3 family.
   0.818
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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