Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_0485TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; amidohydrolase; KEGG: eca:ECA0496 putative phosphonate metabolism protein. (378 aa)    
Predicted Functional Partners:
PC1_0484
Phosphonate C-P lyase system protein PhnL; KEGG: eca:ECA0495 putative phosphonate ABC transporter ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; protein of unknown function UPF0040; SMART: AAA ATPase.
 
 
 0.998
PC1_0479
TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: eca:ECA0490 putative phosphonate metabolism protein.
 
 
 0.996
PC1_0480
TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: eca:ECA0491 carbon-phosphorus lyase complex subunit.
 
 
 0.996
PC1_0481
PFAM: phosphonate metabolism; KEGG: eca:ECA0492 putative phosphonate metabolism protein.
 
 
 0.996
PC1_0482
Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 
 0.996
PC1_0892
KEGG: spe:Spro_0516 phosphonate C-P lyase system protein PhnL; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.991
PC1_0887
TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: spe:Spro_0521 phosphonate metabolism PhnG.
 
 
 0.988
PC1_0888
TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: ypy:YPK_3695 phosphonate C-P lyase system protein PhnH.
 
 
 0.988
PC1_0889
PFAM: phosphonate metabolism; KEGG: spe:Spro_0519 phosphonate metabolism.
 
 
 0.988
PC1_0890
Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 
 0.987
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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