STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmFrRNA (adenine-N(6)-)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. (311 aa)    
Predicted Functional Partners:
PC1_0638
PFAM: protein of unknown function DUF339; KEGG: eca:ECA0759 hypothetical protein.
       0.573
PC1_0639
PFAM: protein of unknown function DUF1434; KEGG: eca:ECA0760 hypothetical protein.
       0.573
PC1_3505
PFAM: protein of unknown function DUF45; KEGG: eca:ECA3671 hypothetical protein.
 
     0.456
PC1_2726
PFAM: protein of unknown function DUF1456; KEGG: eca:ECA2987 hypothetical protein.
  
     0.418
PC1_0637
Folate-binding protein YgfZ; Folate-binding protein involved in regulating the level of ATP-DnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication; Belongs to the tRNA-modifying YgfZ family.
  
    0.409
PC1_2062
KEGG: eca:ECA2239 hypothetical protein.
 
     0.403
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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