Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_0664PFAM: Flp/Fap pilin component; KEGG: mmw:Mmwyl1_0303 Flp/Fap pilin component. (73 aa)    
Predicted Functional Partners:
PC1_0665
PFAM: peptidase A24A prepilin type IV; KEGG: eca:ECA0787 hypothetical protein.
  
  
 0.913
PC1_0666
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: eca:ECA0788 hypothetical protein.
  
  
 0.908
PC1_0669
Response regulator receiver protein; KEGG: eca:ECA0791 hypothetical protein.
  
  
 0.818
PC1_0667
PFAM: type II and III secretion system protein; KEGG: eca:ECA0789 hypothetical protein; Belongs to the bacterial secretin family.
  
  
 0.770
PC1_0671
PFAM: type II secretion system protein; KEGG: eca:ECA0793 putative type IV pilus protein.
  
  
 0.657
PC1_0672
PFAM: type II secretion system protein; KEGG: eca:ECA0794 putative type IV pilus protein.
  
  
 0.608
PC1_0670
PFAM: type II secretion system protein E; KEGG: eca:ECA0792 putative type IV pilus protein.
  
  
 0.601
PC1_0675
KEGG: eca:ECA0797 hypothetical protein.
  
  
 0.572
PC1_0676
KEGG: eca:ECA0798 hypothetical protein.
  
  
 0.556
PC1_0674
KEGG: eca:ECA0796 hypothetical protein.
  
    0.515
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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