Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PC1_0705PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA0828 putative amino acid-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family. (260 aa)    
Predicted Functional Partners:
PC1_2789
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3049 histidine ABC transporter permease protein.
 
 0.957
PC1_2788
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3048 histidine ABC transporter permease protein.
 
 
 0.956
PC1_2787
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3047 histidine/lysine/arginine/ornithine transporter subunit.
 
 
 0.947
PC1_3872
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4082 octopine transport system permease protein.
 
 
 0.785
PC1_1700
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2669 arginine transporter permease subunit ArtQ.
 
 
 0.772
PC1_3873
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4083 octopine transport system permease protein.
 
    0.769
PC1_1699
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2670 arginine transporter permease subunit ArtM.
 
  
 0.756
PC1_0230
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0246 putative amino-acid transport system permease protein.
 
   0.754
PC1_3874
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4084 octopine permease ATP-binding protein P.
 
  
 0.740
PC1_1583
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2769 glutamine ABC transporter permease protein.
 
   0.730
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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