Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PC1_0708TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ecl:EcolC_2072 addiction module antitoxin. (94 aa)    
Predicted Functional Partners:
PC1_0709
PFAM: protein of unknown function DUF172; KEGG: spe:Spro_1651 prevent-host-death protein.
 
 
 
 0.967
PC1_4184
PFAM: protein of unknown function DUF172; KEGG: eca:ECA0064 hypothetical protein.
 
 
 
 0.867
PC1_0707
Hypothetical protein.
       0.421
PC1_0710
Phage/plasmid primase, P4 family; KEGG: esa:ESA_00620 hypothetical protein; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 protein; primase P4; TOPRIM domain protein; P4 alpha zinc-binding domain protein; SMART: P4 alpha zinc-binding domain protein.
       0.418
PC1_0711
KEGG: esa:ESA_00622 hypothetical protein.
       0.415
PC1_0712
KEGG: esa:ESA_00623 hypothetical protein.
       0.415
PC1_0713
KEGG: eca:ECA1671 hypothetical protein.
       0.415
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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