Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PC1_0809PFAM: MotA/TolQ/ExbB proton channel; KEGG: eca:ECA0926 putative biopolymer transport protein. (227 aa)    
Predicted Functional Partners:
PC1_0812
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: eca:ECA0929 biopolymer transport protein.
 
 
 0.936
PC1_0148
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: eca:ECA4298 putative biopolymer transport protein.
 
 
 0.892
PC1_0346
TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: eca:ECA0359 biopolymer transport protein ExbD.
 
 
 0.833
PC1_0808
Phospholipase D; KEGG: eca:ECA0925 putative phospholipase; PFAM: Phospholipase D/viral envelope domain protein; phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.
       0.833
PC1_1147
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: eca:ECA1270 putative biopolymer transport protein.
 
 
 0.799
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. Required, with TolQ, for the proton motive force-dependent activation of TolA and for TolA-Pal interaction.
 
 
 0.760
PC1_0275
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA0289 putative ABC transporter ATP-binding protein YhbG.
 
   
 0.740
lpxA
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.698
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. Required, with TolR, for the proton motive force-dependent activation of TolA and for TolA-Pal interaction.
  
   
 0.698
PC1_0811
KEGG: eca:ECA0928 TonB-like protein.
  
 
 0.688
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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