Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PC1_0992KEGG: eca:ECA1097 putative type I secretion protein, ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (712 aa)    
Predicted Functional Partners:
PC1_0991
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA1096 putative type I secretion protein.
 
 0.982
PC1_0993
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: eca:ECA1098 putative type I secretion protein.
 
  
 0.942
PC1_3062
Type I secretion system ATPase; KEGG: eca:ECA3268 putative toxin secretion ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 
0.917
PC1_1408
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA1535 HlyD family secretion protein.
 
 
 0.864
PC1_1556
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA2782 protease secretion protein.
 
 
 0.853
PC1_3063
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA3269 HlyD family secretion protein.
    0.816
PC1_3061
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: eca:ECA3267 agglutination protein.
 
  
 0.814
PC1_3060
PFAM: von Willebrand factor type A; Hemolysin-type calcium-binding region; KEGG: eca:ECA3266 putative hemagglutinin/hemolysin-related protein.
 
  
 0.804
PC1_0994
Hypothetical protein; KEGG: eca:ECA1099 large repetitive protein.
 
  
 0.727
PC1_3057
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: eca:ECA3263 hypothetical protein.
 
  
 0.676
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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