Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PC1_0578 | PC1_1037 | PC1_0578 | PC1_1037 | TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05859 peptide synthetase protein; Belongs to the ATP-dependent AMP-binding enzyme family. | PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1138 transporter. | 0.456 |
PC1_0578 | cyoE | PC1_0578 | PC1_1039 | TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05859 peptide synthetase protein; Belongs to the ATP-dependent AMP-binding enzyme family. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.449 |
PC1_1037 | PC1_0578 | PC1_1037 | PC1_0578 | PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1138 transporter. | TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05859 peptide synthetase protein; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.456 |
PC1_1037 | PC1_1038 | PC1_1037 | PC1_1038 | PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1138 transporter. | PFAM: transposase IS4 family protein; KEGG: ect:ECIAI39_4702 transposase, IS4. | 0.431 |
PC1_1037 | cyoE | PC1_1037 | PC1_1039 | PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1138 transporter. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.478 |
PC1_1038 | PC1_1037 | PC1_1038 | PC1_1037 | PFAM: transposase IS4 family protein; KEGG: ect:ECIAI39_4702 transposase, IS4. | PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1138 transporter. | 0.431 |
PC1_1038 | cyoE | PC1_1038 | PC1_1039 | PFAM: transposase IS4 family protein; KEGG: ect:ECIAI39_4702 transposase, IS4. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.494 |
cyoE | PC1_0578 | PC1_1039 | PC1_0578 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05859 peptide synthetase protein; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.449 |
cyoE | PC1_1037 | PC1_1039 | PC1_1037 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1138 transporter. | 0.478 |
cyoE | PC1_1038 | PC1_1039 | PC1_1038 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | PFAM: transposase IS4 family protein; KEGG: ect:ECIAI39_4702 transposase, IS4. | 0.494 |