Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_1127PFAM: periplasmic binding protein; KEGG: yen:YE3190 hypothetical protein. (368 aa)    
Predicted Functional Partners:
PC1_3037
PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: eca:ECA3243 putative ferric-enterobactin ABC transporter ATP-binding protein.
 
 
 0.876
PC1_3036
PFAM: transport system permease protein; KEGG: eca:ECA3242 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   0.848
PC1_1126
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spe:Spro_1016 TonB-dependent siderophore receptor.
 
     0.826
PC1_2845
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3094 ABC transporter ATP-binding protein.
 
 
 0.629
PC1_3384
PFAM: periplasmic binding protein; KEGG: eca:ECA3564 iron-chelating periplasmic-binding protein.
  
     0.585
PC1_0175
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4254 putative iron(III) ABC transporter ATP-binding protein.
 
 
 0.551
PC1_2846
PFAM: transport system permease protein; KEGG: eca:ECA3095 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   0.541
PC1_0464
PFAM: isochorismatase hydrolase; phosphopantetheine-binding; KEGG: eca:ECA0479 enterobactin synthetase component B (isochorismatase).
 
  
 0.530
PC1_0578
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05859 peptide synthetase protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.520
PC1_0173
PFAM: transport system permease protein; KEGG: eca:ECA4256 putative iron(III) ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   0.501
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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