STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_1343PFAM: Myo-inositol catabolism IolB domain protein; KEGG: eca:ECA1465 hypothetical protein. (278 aa)    
Predicted Functional Partners:
PC1_1341
PFAM: PfkB domain protein; KEGG: eca:ECA1463 putative carbohydrate kinase.
 
 
 0.998
PC1_1335
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: eca:ECA1457 putative thiamine pyrophosphate-dependent protein; Belongs to the TPP enzyme family.
 
 
 0.997
PC1_1342
Myo-inosose-2 dehydratase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: eca:ECA1464 putative myo-inositol catabolism protein.
 
  
 0.966
PC1_1340
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA1462 oxidoreductase.
 
  
 0.928
PC1_1336
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA1458 putative myo-inositol 2-dehydrogenase.
 
  
 0.917
PC1_1333
Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: eca:ECA1455 putative transcriptional regulator.
 
   
 0.786
PC1_1272
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: eca:ECA1396 hypothetical protein.
 
  
 0.740
PC1_1275
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: eca:ECA1399 hypothetical protein.
 
  
 0.705
PC1_1334
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: eca:ECA1456 putative aldehyde dehydrogenase.
  
 0.665
PC1_2165
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA2140 putative oxidoreductase.
 
  
 0.646
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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