STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_1676PFAM: glycosyl transferase family 8; KEGG: dsh:Dshi_3427 glycosyl transferase family protein. (615 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.714
PC1_1675
PFAM: glycosyl transferase family 8; KEGG: rec:RHECIAT_PC0000269 putative glycosyltransferase protein.
 
   
0.670
PC1_1677
PFAM: glycosyl transferase family 8; KEGG: rsh:Rsph17029_3683 glycosyl transferase family protein.
 
   
0.591
PC1_4092
PFAM: O-antigen polymerase; KEGG: spe:Spro_1774 O-antigen polymerase.
  
  
 0.518
PC1_0185
KEGG: eca:ECA4244 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
    0.480
PC1_2050
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: eca:ECA2252 3-hydroxy acid dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.476
PC1_0301
Multi-sensor hybrid histidine kinase; KEGG: eca:ECA0314 aerobic respiration control sensor protein ArcB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAS domain containing protein.
     
 0.425
PC1_3756
PFAM: MscS Mechanosensitive ion channel; KEGG: eca:ECA3967 hypothetical protein.
   
 
 0.414
PC1_4084
PFAM: Peptidase M23; KEGG: eca:ECA0170 hypothetical protein.
   
 
 0.413
PC1_1323
PFAM: protein of unknown function DUF1017; KEGG: eca:ECA1447 hypothetical protein.
 
  
 0.411
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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