Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_1908PFAM: periplasmic pectate lyase; KEGG: eca:ECA2402 pectate disaccharide-lyase. (543 aa)    
Predicted Functional Partners:
PC1_3047
PFAM: Pectinesterase; KEGG: eca:ECA3253 pectinesterase A.
    
 0.928
PC1_1884
KEGG: eca:ECA2426 oligogalacturonate lyase.
     
 0.914
PC1_4146
PFAM: Pectinesterase; KEGG: eca:ECA0107 pectin methylesterase.
    
 0.911
PC1_0989
PFAM: glycoside hydrolase family 28; KEGG: eca:ECA1095 endo-polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
     
 0.904
PC1_2125
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: aca:ACP_2679 polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
     
 0.904
PC1_4259
KEGG: eca:ECA4510 exopolygalacturonate lyase.
     
 0.904
PC1_2170
PFAM: periplasmic pectate lyase; KEGG: eca:ECA2135 periplasmic pectate lyase.
     
 
0.900
PC1_2863
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: eca:ECA3112 pectate lyase.
     
  0.900
PC1_3858
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: eca:ECA4067 pectate lyase I.
     
  0.900
PC1_3859
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: eca:ECA4068 pectate lyase II.
     
  0.900
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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