Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
PC1_1950PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: eca:ECA2358 putative aldolase. (300 aa)    
Predicted Functional Partners:
PC1_1951
KEGG: eca:ECA2357 putative kinase.
 
     0.905
PC1_1952
Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: eca:ECA2356 putative sugar phosphotransferase enzyme IIA component.
  
    0.710
PC1_1953
KEGG: eca:ECA2355 hypothetical protein.
       0.707
PC1_1954
PFAM: putative sugar-specific permease SgaT/UlaA; KEGG: eca:ECA2354 ascorbate-specific PTS system enzyme IIC.
  
    0.543
PC1_1955
PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA2353 hypothetical protein.
       0.537
PC1_1956
Phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.
     
 0.529
PC1_1926
KEGG: eca:ECA2385 PTS system, mannose-specific IIAB component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component.
 
   
 0.527
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.523
PC1_1448
KEGG: eca:ECA1567 putative lipoprotein.
  
     0.503
PC1_1949
PFAM: SpoVR family protein; KEGG: eca:ECA2359 hypothetical protein.
       0.440
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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