STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_1981PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: eca:ECA2328 global DNA-binding transcriptional dual regulator H-NS; Belongs to the histone-like protein H-NS family. (135 aa)    
Predicted Functional Partners:
PC1_1065
PFAM: Haemolysin expression modulating family protein; KEGG: eca:ECA1165 hemolysin expression-modulating protein.
  
 
 0.905
PC1_2442
PFAM: LPP repeat-containing protein; KEGG: eca:ECA1866 major outer membrane lipoprotein.
  
    0.799
PC1_2026
PFAM: Haemolysin expression modulating family protein; KEGG: elf:LF82_0329 H-NS/StpA-binding protein 2.
  
 
 
 0.762
zapB
Protein of unknown function DUF904; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
    0.712
PC1_0290
PFAM: protein of unknown function DUF1043; KEGG: eca:ECA0304 cytochrome d ubiquinol oxidase subunit III.
  
     0.708
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.650
PC1_1045
PFAM: Uncharacterized lipoprotein; KEGG: eca:ECA1145 hypothetical protein.
  
     0.640
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.626
PC1_1784
PFAM: porin Gram-negative type; KEGG: eca:ECA2542 outer membrane protein; Belongs to the Gram-negative porin family.
  
  
 0.625
PC1_0775
Phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: cko:CKO_00377 phosphohistidinoprotein-hexose phosphotransferase component of PTS system (HPr).
   
    0.610
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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