Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
PC1_1986PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2323 oligopeptide transporter permease. (306 aa)    
Predicted Functional Partners:
PC1_1987
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2322 oligopeptide transport system permease protein.
 0.999
PC1_1989
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: eca:ECA2320 oligopeptide transport ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.999
PC1_1988
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: eca:ECA2321 oligopeptide transporter ATP-binding component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.997
PC1_1985
PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA2324 periplasmic oligopeptide-binding protein.
 
 0.995
PC1_1984
PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA2325 periplasmic oligopeptide-binding protein.
 
 0.991
PC1_2319
PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA1992 periplasmic murein peptide-binding protein.
 
 0.987
PC1_2372
PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA1942 putative periplasmic oligopeptide-binding protein.
 
 0.987
PC1_0047
KEGG: eca:ECA4391 dipeptide transporter ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.887
PC1_3864
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4073 ABC transporter ATP binding protein.
 
 
 0.885
PC1_0426
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0446 ABC transporter permease protein.
 
 
 0.874
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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