STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_1990PFAM: protein of unknown function DUF440; KEGG: eca:ECA2319 dsDNA-mimic protein; Belongs to the UPF0263 family. (107 aa)    
Predicted Functional Partners:
PC1_1045
PFAM: Uncharacterized lipoprotein; KEGG: eca:ECA1145 hypothetical protein.
  
     0.770
PC1_0137
KEGG: eca:ECA4310 putative stress resistance protein.
  
     0.749
PC1_2807
PFAM: YfcL protein; KEGG: eca:ECA3065 hypothetical protein.
  
     0.748
mukE
Chromosome segregation and condensation protein MukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF.
  
     0.722
PC1_1588
PFAM: virulence-related outer membrane protein; KEGG: eca:ECA2764 outer membrane protein X.
  
     0.717
PC1_4250
PFAM: ATP synthase I chain; KEGG: eca:ECA4519 F0F1 ATP synthase subunit I.
  
     0.716
bamC
NlpBDapX family lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.702
PC1_3430
PFAM: Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: eca:ECA3608 hypothetical protein.
  
     0.699
PC1_1244
TIGRFAM: cyd operon protein YbgE; KEGG: eca:ECA1368 hypothetical protein.
  
     0.698
mukF
Chromosome segregation and condensation protein MukF; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity.
  
     0.698
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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