STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_1997Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (188 aa)    
Predicted Functional Partners:
PC1_1998
PFAM: protein of unknown function UPF0259; KEGG: eca:ECA2305 hypothetical protein.
  
    0.736
PC1_1996
PFAM: thioesterase superfamily protein; KEGG: eca:ECA2314 acyl-CoA thioester hydrolase.
       0.564
PC1_1771
PFAM: protein of unknown function DUF343; KEGG: eca:ECA2555 hypothetical protein; Belongs to the UPF0434 family.
  
     0.447
PC1_1999
PFAM: protein of unknown function UPF0153; KEGG: sea:SeAg_B1413 hypothetical protein.
       0.411
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.