Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_2152PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA2155 putative acetyltransferase. (184 aa)    
Predicted Functional Partners:
PC1_2150
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA2157 ABC transporter, substrate binding protein.
 
     0.871
PC1_2151
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA2156 ABC transporter, substrate binding protein.
 
     0.869
PC1_2153
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2154 putative ABC transporter, permease.
     0.847
PC1_2149
KEGG: eca:ECA2158 hypothetical protein.
 
     0.741
PC1_2154
PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: eca:ECA2153 ABC transporter, ATP-binding protein.
 
     0.714
PC1_3946
KEGG: GPI anchored protein.
   
    0.568
PC1_2146
PFAM: Luciferase-like monooxygenase; KEGG: eca:ECA2161 putative luciferase-like monooxygenase.
     0.473
PC1_1100
PFAM: band 7 protein; SMART: band 7 protein; KEGG: eca:ECA1196 hypothetical protein.
  
    0.430
PC1_3718
HflC protein; HflC and HflK could regulate a protease.
  
    0.430
PC1_3719
HflK protein; HflC and HflK could encode or regulate a protease.
  
    0.430
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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