Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_2158TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: eca:ECA2147 putative ABC transport ATP-binding subunit. (278 aa)    
Predicted Functional Partners:
PC1_2159
TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: eca:ECA2146 putative branched-chain amino acid transport system, permease component.
 
 0.995
PC1_2160
TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: eca:ECA2145 putative branched-chain amino acid transport system, permease component.
 
 
 0.994
PC1_2161
TIGRFAM: urea ABC transporter, urea binding protein; PFAM: Extracellular ligand-binding receptor; KEGG: eca:ECA2144 putative substrate-binding periplasmic transport protein.
 
 
 0.976
PC1_2157
KEGG: eca:ECA2148 putative ABC transport ATP-binding subunit; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
0.970
PC1_0106
PFAM: inner-membrane translocator; KEGG: eca:ECA4339 leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
  
 0.867
PC1_0105
PFAM: inner-membrane translocator; KEGG: eca:ECA4340 branched-chain amino acid transporter permease subunit LivH; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.583
PC1_2155
KEGG: eca:ECA2149 hypothetical protein.
       0.506
PC1_2156
KEGG: ypy:YPK_1703 hypothetical protein.
       0.506
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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