Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PC1_2196KEGG: eca:ECA2096 type III secretion protein. (210 aa)    
Predicted Functional Partners:
PC1_2197
TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: eca:ECA2095 type III secretion protein.
     
 0.850
PC1_2198
TIGRFAM: type III secretion apparatus protein, YscI/HrpB family; KEGG: eca:ECA2094 type III secretion protein.
     
 0.840
PC1_2195
TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: HrpE family protein; KEGG: eca:ECA2097 type III secretion protein.
     
 0.815
PC1_2199
KEGG: eca:ECA2093 type III secretion protein.
     
 0.631
PC1_2194
PFAM: HrpF family protein; KEGG: eca:ECA2098 type III secretion protein.
     
 0.504
PC1_2192
TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: eca:ECA2100 type III secretion protein.
     
 0.484
PC1_2193
KEGG: eca:ECA2099 type III secretion protein.
       0.428
PC1_2189
PFAM: Harpin family protein; KEGG: eca:ECA2103 harpin.
       0.425
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.