STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_2247PFAM: Transglycosylase-associated protein; KEGG: eca:ECA2044 hypothetical protein. (82 aa)    
Predicted Functional Partners:
PC1_1529
PFAM: protein of unknown function DUF1508; KEGG: bcj:BCAL0360 hypothetical protein.
  
  
 0.547
PC1_0456
KEGG: eca:ECA0471 hypothetical protein.
  
  
 0.445
PC1_0515
PFAM: CsbD family protein; KEGG: eca:ECA0631 putative stress-response protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.445
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.