Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
PC1_2249PFAM: YheO domain protein; KEGG: eca:ECA2041 putative DNA-binding protein. (207 aa)    
Predicted Functional Partners:
PC1_2252
PFAM: alanine racemase domain protein; KEGG: eca:ECA2038 hypothetical protein.
 
     0.637
PC1_2251
PFAM: ornithine cyclodeaminase/mu-crystallin; homoserine dehydrogenase NAD-binding; KEGG: eca:ECA2039 putative ornithine cyclodeaminase.
 
  
 0.630
PC1_2250
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: eca:ECA2040 serine/threonine dehydratase.
 
     0.629
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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