STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_2399TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; KEGG: eca:ECA1912 putative ABC transporter, periplasmic protein. (352 aa)    
Predicted Functional Partners:
PC1_2398
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1913 ABC transporter, permease protein.
 
  
 0.954
PC1_2397
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1914 ABC transporter, ATP-binding protein.
 
     0.938
PC1_2396
TIGRFAM: urea carboxylase-associated protein 2; KEGG: eca:ECA1915 hypothetical protein.
 
     0.936
PC1_2395
TIGRFAM: urea carboxylase-associated protein 1; KEGG: eca:ECA1916 hypothetical protein.
 
     0.934
PC1_2393
Urea carboxylase; KEGG: eca:ECA1917 putative allophanate hydrolase; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
 
    0.869
PC1_2163
KEGG: eca:ECA2142 UreA amidolyase; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
 
   
 0.836
PC1_2164
TIGRFAM: allophanate hydrolase; PFAM: Amidase; KEGG: eca:ECA2141 amidase.
 
   
 0.778
PC1_2394
Hypothetical protein.
       0.695
PC1_3747
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3955 ABC transporter protein, membrane protein.
 
  
 0.531
PC1_1402
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1529 putative taurine transport system permease protein.
 
  
 0.526
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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