STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_3160KEGG: ypb:YPTS_3590 hypothetical protein. (82 aa)    
Predicted Functional Partners:
PC1_3161
Hypothetical protein.
       0.773
PC1_3162
Transcriptional regulator, TraR/DksA family; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: ecz:ECS88_2222 hypothetical protein.
       0.773
PC1_3163
KEGG: eca:ECA2630 hypothetical protein.
       0.752
PC1_3164
PFAM: replication gene A; KEGG: ypy:YPK_0892 replication gene A.
       0.752
PC1_3165
Hypothetical protein.
       0.752
PC1_3166
Hypothetical protein; KEGG: eca:ECA2626 putative phage-related protein.
       0.752
PC1_3167
KEGG: ecv:APECO1_4036 hypothetical protein.
       0.752
PC1_3158
Hypothetical protein.
       0.586
PC1_3159
Phage protein B; KEGG: ecv:APECO1_1186 phage protein B.
       0.586
PC1_3157
Hypothetical protein.
       0.414
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.