STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_3188PFAM: GPW/gp25 family protein; KEGG: yps:YPTB1750 phage-related protein. (114 aa)    
Predicted Functional Partners:
PC1_3190
TIGRFAM: phage tail protein I; KEGG: eca:ECA2609 putative phage tail protein I.
 
 
 0.981
PC1_3187
TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: see:SNSL254_A4377 baseplate assembly protein V.
 
 
 0.979
PC1_3189
PFAM: Baseplate J family protein; KEGG: ecv:APECO1_4480 putative baseplate assembly protein.
 
 
 0.979
PC1_3191
Phage-related tail fibre protein-like protein; KEGG: ecz:ECS88_2817 putative variable tail fiber protein.
 
  
 0.975
PC1_3192
PFAM: tail sheath protein; KEGG: kpn:KPN_04864 putative prophage tail sheath.
 
 
 0.968
PC1_3198
PFAM: late control D family protein; KEGG: yps:YPTB1739 D protein bacteriophage 186 and P2.
 
 
 0.951
PC1_3197
PFAM: P2 GpU family protein; KEGG: yps:YPTB1740 putative phage tail protein.
 
 
 0.950
PC1_2664
PFAM: tail sheath protein; KEGG: yen:YE1645 major tail sheath protein.
 
 
 0.949
PC1_3193
TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: see:SNSL254_A4384 phage major tail tube protein.
 
   0.940
PC1_2665
PFAM: late control D family protein; KEGG: yen:YE1644 regulator of late gene expression.
 
 
 0.939
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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