Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
PC1_3232Hypothetical protein. (122 aa)    
Predicted Functional Partners:
PC1_3233
TIGRFAM: YD repeat protein; PFAM: guanine-specific ribonuclease N1 and T1; RHS protein; YD repeat-containing protein; KEGG: eca:ECA3421 rhs protein.
       0.773
PC1_3234
KEGG: eca:ECA3422 hypothetical protein.
       0.718
PC1_3235
KEGG: eca:ECA3423 hypothetical protein.
       0.718
PC1_3236
SMART: Ankyrin; KEGG: eca:ECA3424 putative lipoprotein.
       0.446
PC1_3237
PFAM: PAAR repeat-containing protein; KEGG: eca:ECA3426 putative phospholipase.
       0.446
PC1_3238
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA3427 hypothetical protein.
       0.446
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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