Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_3530PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3756 ABC transporter ATP-binding protein. (236 aa)    
Predicted Functional Partners:
PC1_3531
PFAM: ABC-3 protein; KEGG: eca:ECA3757 ABC transporter membrane protein.
 
     0.950
PC1_3532
PFAM: periplasmic solute binding protein; KEGG: eca:ECA3758 ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
     0.920
PC1_1919
PFAM: periplasmic solute binding protein; KEGG: eca:ECA2392 periplasmic chelated iron-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
     0.781
PC1_1916
PFAM: ABC-3 protein; transport system permease protein; KEGG: eca:ECA2395 chelated iron transport system membrane protein.
 
     0.773
PC1_1917
PFAM: ABC-3 protein; transport system permease protein; KEGG: eca:ECA2394 chelated iron transport system membrane protein.
 
     0.764
PC1_0578
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05859 peptide synthetase protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.490
PC1_1825
PFAM: ABC-3 protein; KEGG: eca:ECA2486 high-affinity zinc transporter membrane component.
 
     0.450
PC1_3533
KEGG: bcm:Bcenmc03_1796 hypothetical protein.
       0.431
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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