Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
PC1_3906PFAM: IucA/IucC family protein; KEGG: eca:ECA4116 putative siderophore biosynthesis protein. (633 aa)    
Predicted Functional Partners:
PC1_3899
KEGG: eca:ECA4109 hypothetical protein.
 
   
 0.862
PC1_3902
PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: eca:ECA4112 putative octopine/opine/tauropine dehydrogenase.
 
     0.834
PC1_3901
PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4111 transporter.
 
  
 0.831
PC1_3904
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: eca:ECA4114 putative lysine/ornithine decarboxylase.
 
  
 0.794
PC1_3905
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: eca:ECA4115 TonB-dependent siderophore receptor.
 
  
 0.730
PC1_0578
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05859 peptide synthetase protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.677
PC1_1522
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: eca:ECA2810 TonB-dependent ferric achromobactin receptor.
  
  
 0.655
PC1_0065
TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: protein of unknown function DUF637 hemagglutinin putative; filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; KEGG: plu:plu3064 hypothetical protein.
  
     0.651
PC1_3903
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: eca:ECA4113 putative cystathionine beta-synthase.
 
  
 0.614
PC1_2072
PFAM: Zonular occludens toxin; KEGG: hiq:CGSHiGG_00645 putative phage-related membrane protein.
  
     0.552
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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