Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_3989TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsk:RSKD131_4229 polar amino acid ABC transporter, inner membrane subunit. (407 aa)    
Predicted Functional Partners:
PC1_3988
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rsh:Rsph17029_3587 extracellular solute-binding protein.
 
 
 0.988
PC1_3991
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsk:RSKD131_4227 ABC transporter related.
 
 
 0.982
PC1_3990
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsk:RSKD131_4228 polar amino acid ABC transporter, inner membrane subunit precursor.
 
 
0.980
PC1_0226
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA0242 L-amino acid ABC transporter ATP-binding protein.
 
 
 0.957
PC1_0229
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA0245 general L-amino ABC transporter binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.956
PC1_0227
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0243 L-amino acid ABC transporter permease protein.
 
 
0.924
PC1_3995
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA4195 putative amino-acid ABC transporter binding protein; Belongs to the bacterial solute-binding protein 3 family.
  
 
 0.908
PC1_0228
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0244 L-amino acid ABC transporter permease protein.
  
  
 
0.907
PC1_4273
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4467 binding-protein-dependent transport system inner membrane component.
 
 
0.701
PC1_1190
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1312 glutamate/aspartate transport system permease protein.
 
 
0.697
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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