Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PC1_4036PFAM: inner-membrane translocator; KEGG: eca:ECA4233 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family. (320 aa)    
Predicted Functional Partners:
PC1_4038
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4235 ABC transporter ATP-binding protein.
 
 0.997
PC1_4039
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: eca:ECA4236 ABC transporter periplasmic binding protein.
 
 0.992
PC1_4037
PFAM: inner-membrane translocator; KEGG: eca:ECA4234 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.984
xylG
D-xylose ABC transporter, ATPase subunit; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
 
 
 0.863
araG
ABC transporter related; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
 
 
 0.859
PC1_1338
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1460 putative sugar ABC transporter, ATP-binding protein.
 
 
 0.855
PC1_1662
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2719 ABC transporter, ATP-binding protein.
 
   0.852
PC1_2723
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE2608 putative sugar transport, ATP-binding protein.
 
 
 0.849
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.849
PC1_1337
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: eca:ECA1459 putative sugar ABC transporter, periplasmic protein.
 
 
 0.847
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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