Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PC1_4110PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0136 ABC transporter permease protein. (306 aa)    
Predicted Functional Partners:
PC1_4111
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0135 ABC transporter permease protein.
 
 0.997
PC1_4109
PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA0137 ABC transporter periplasmic binding protein.
 
 0.995
PC1_4108
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: eca:ECA0138 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.989
PC1_1493
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2832 putative ABC transporter permease protein.
 
 0.976
PC1_1490
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: eca:ECA2835 putative ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.957
PC1_1491
PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA2834 putative ABC transporter periplasmic binding protein.
 
 0.953
PC1_1492
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2833 putative ABC transporter permease protein.
  
  
 
0.903
PC1_0046
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4392 dipeptide transporter.
 
 
 0.891
PC1_0426
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0446 ABC transporter permease protein.
 
 
 0.888
PC1_3865
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4074 ABC transporter permease protein.
 
 0.888
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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