STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_4135PFAM: fatty acid desaturase; KEGG: eca:ECA0116 putative fatty acid desaturase. (366 aa)    
Predicted Functional Partners:
PC1_4136
PFAM: fatty acid desaturase; KEGG: eca:ECA0115 putative fatty acid desaturase.
 
  
 
0.980
PC1_4137
PFAM: fatty acid hydroxylase; KEGG: eca:ECA0114 hypothetical protein.
 
  
 0.932
PC1_3965
Phospholipase A(2); Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.900
PC1_4140
PFAM: beta-lactamase domain protein; KEGG: eca:ECA0111 hypothetical protein.
 
    0.876
PC1_4138
PFAM: phosphoesterase PA-phosphatase related; KEGG: eca:ECA0113 hypothetical protein.
 
  
 0.875
PC1_4139
TIGRFAM: adenylate-forming enzyme; KEGG: eca:ECA0112 hypothetical protein.
 
     0.871
PC1_4141
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: eca:ECA0110 hypothetical protein.
 
   
 0.824
PC1_4142
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: eca:ECA0109 hypothetical protein.
  
  
 0.791
PC1_4134
KEGG: eca:ECA0117 hypothetical protein.
       0.603
PC1_4143
PFAM: GlpM family protein; KEGG: eca:ECA0108 hypothetical protein.
       0.488
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.