Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PC1_4166KEGG: eca:ECA0086 hypothetical protein. (238 aa)    
Predicted Functional Partners:
PC1_1167
KEGG: eca:ECA1289 hypothetical protein.
  
     0.770
PC1_3128
KEGG: eca:ECA3332 hypothetical protein.
  
     0.768
rcsF
Outer membrane lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.767
PC1_1914
KEGG: eca:ECA2397 hypothetical protein.
  
   
 0.762
PC1_0885
KEGG: eca:ECA0979 hypothetical protein.
  
   
 0.756
PC1_1962
PFAM: MltA-interacting MipA family protein; KEGG: eca:ECA2347 MltA-interacting protein.
  
     0.755
PC1_3055
TIGRFAM: HAD superfamily (subfamily IF) hydrolase, YfhB; KEGG: eca:ECA3261 hypothetical protein.
  
     0.750
PC1_0097
PFAM: protein of unknown function DUF1145; KEGG: eca:ECA4348 hypothetical protein.
  
     0.749
PC1_2049
PFAM: protein of unknown function DUF1283; KEGG: eca:ECA2253 hypothetical protein; Belongs to the UPF0482 family.
  
   
 0.744
PC1_1774
KEGG: eca:ECA2552 hypothetical protein.
  
     0.737
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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