STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnAAspartate/ammonia ligase; KEGG: eca:ECA0003 asparagine synthetase AsnA; TIGRFAM: aspartate/ammonia ligase; PFAM: aspartate--ammonia ligase. (330 aa)    
Predicted Functional Partners:
PC1_1200
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; KEGG: eca:ECA1323 asparagine synthetase B.
   
 
 0.921
argG
KEGG: eca:ECA0104 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
   
 
  0.903
pyrB
KEGG: eca:ECA0382 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.902
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.902
pyrI
Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
     
  0.900
PC1_0398
TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: eca:ECA0426 aspartate ammonia-lyase.
     
  0.900
PC1_0506
TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: eca:ECA0621 aspartate ammonia-lyase.
     
  0.900
PC1_0996
L-asparaginase, type II; KEGG: eca:ECA1102 L-asparaginase precursor; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; Belongs to the asparaginase 1 family.
     
  0.900
PC1_1171
TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: eca:ECA1293 putative aspartate/glutamate racemase; Belongs to the aspartate/glutamate racemases family.
     
  0.900
PC1_1378
TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: eca:ECA1500 aspartate racemase; Belongs to the aspartate/glutamate racemases family.
     
  0.900
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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