Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB24678.1 | SKB24679.1 | SAMN05660866_00019 | SAMN05660866_00020 | Putative ATPase. | Rhomboid family protein. | 0.603 |
SKB24678.1 | SKB27946.1 | SAMN05660866_00019 | SAMN05660866_00507 | Putative ATPase. | ATP-dependent DNA helicase RecQ. | 0.505 |
SKB24678.1 | SKB42181.1 | SAMN05660866_00019 | SAMN05660866_01412 | Putative ATPase. | ATP-dependent DNA helicase RecQ. | 0.505 |
SKB24678.1 | SKB45960.1 | SAMN05660866_00019 | SAMN05660866_01610 | Putative ATPase. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.577 |
SKB24678.1 | SKB56427.1 | SAMN05660866_00019 | SAMN05660866_02095 | Putative ATPase. | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | 0.469 |
SKB24678.1 | SKB66708.1 | SAMN05660866_00019 | SAMN05660866_02708 | Putative ATPase. | ATP-dependent DNA helicase RecQ. | 0.506 |
SKB24678.1 | SKB81727.1 | SAMN05660866_00019 | SAMN05660866_03432 | Putative ATPase. | ATP-dependent DNA helicase RecQ. | 0.508 |
SKB24678.1 | polA | SAMN05660866_00019 | SAMN05660866_01219 | Putative ATPase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.466 |
SKB24679.1 | SKB24678.1 | SAMN05660866_00020 | SAMN05660866_00019 | Rhomboid family protein. | Putative ATPase. | 0.603 |
SKB27946.1 | SKB24678.1 | SAMN05660866_00507 | SAMN05660866_00019 | ATP-dependent DNA helicase RecQ. | Putative ATPase. | 0.505 |
SKB27946.1 | SKB45960.1 | SAMN05660866_00507 | SAMN05660866_01610 | ATP-dependent DNA helicase RecQ. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.575 |
SKB27946.1 | SKB66708.1 | SAMN05660866_00507 | SAMN05660866_02708 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase RecQ. | 0.650 |
SKB27946.1 | SKB81727.1 | SAMN05660866_00507 | SAMN05660866_03432 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase RecQ. | 0.457 |
SKB27946.1 | polA | SAMN05660866_00507 | SAMN05660866_01219 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.870 |
SKB42181.1 | SKB24678.1 | SAMN05660866_01412 | SAMN05660866_00019 | ATP-dependent DNA helicase RecQ. | Putative ATPase. | 0.505 |
SKB42181.1 | SKB45960.1 | SAMN05660866_01412 | SAMN05660866_01610 | ATP-dependent DNA helicase RecQ. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.575 |
SKB42181.1 | SKB66708.1 | SAMN05660866_01412 | SAMN05660866_02708 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase RecQ. | 0.657 |
SKB42181.1 | SKB81727.1 | SAMN05660866_01412 | SAMN05660866_03432 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase RecQ. | 0.458 |
SKB42181.1 | polA | SAMN05660866_01412 | SAMN05660866_01219 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.870 |
SKB45960.1 | SKB24678.1 | SAMN05660866_01610 | SAMN05660866_00019 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Putative ATPase. | 0.577 |
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